Description

combines overlapping or “book-ended” features in an interval file into a single feature which spans all of the combined features.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

bed:file

Input BED file

*.{bed}

Output

name:type
description
pattern

bed

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

*.bed:file

Overlapped bed file with combined features

*.{bed}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

bedtools
MIT

A set of tools for genomic analysis tasks, specifically enabling genome arithmetic (merge, count, complement) on various file types.

bedtools.readthedocs.io/en/latest/content/tools/merge
included in
cutandrunnascentradseqrnavartfactivityvariantbenchmarkingviralmetagenomeviralrecon
maintainers
Github user edmundmiller
Github user sruthipsuresh
Github user drpatelh
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